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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25503812_25504387_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25503812 - 25504387
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGAGAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTTTTGAGA
Flanking Amino Acid:
KAAIPDDVFECHSDIILCCT
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
63.5
0.3
1.2
67.6
42.1
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
65.4
0.48
1.6
77.15
33.9

Associated Gene:

Gene:
ASB4
Ensembl Gene ID:
ENSAPLG00000015492
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016143
25495687 - 25504509
8823