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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25523007_25523879_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25523007 - 25523879
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
AACTGAGTAACT
Flanking Amino Acid:
YGTDAIIYLKALSTESVEKL
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
43.6
-0.4
2.5
64.53
45.5

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045209
25522543 - 25530274
7732
ENSAPLT00000035216
25522192 - 25530274
8083
ENSAPLT00000016375
25521018 - 25530274
9257