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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25524726_25525010_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25524726 - 25525010
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTGG
5'SS Class:
weak_major
3'SS Sequence:
CCTCTTAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCTCTTAAAT
Flanking Amino Acid:
VLGQEDLAIKISDRGGGVPV
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
62.3
44.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.9
0.4
1
67.3
36.9
Minor 5ss
54.4
0.15
2.1
67.3
43.8
Minor BPS
70.4
0.72
1.4
82.38
38.6

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045209
25522543 - 25530274
7732
ENSAPLT00000035216
25522192 - 25530274
8083
ENSAPLT00000016375
25521018 - 25530274
9257