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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25525110_25525809_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25525110 - 25525809
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
TTCATTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTAACCTTCATT
Flanking Amino Acid:
LFHMLFELFKNSMRATVEFQ
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.2
43.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.8
0.69
0.8
75.9
32.6
Minor 5ss
36.2
-1.6
3.2
46.2
49.1
Minor BPS
58.8
0.36
1.8
74.55
42.1

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045209
25522543 - 25530274
7732
ENSAPLT00000035216
25522192 - 25530274
8083
ENSAPLT00000016375
25521018 - 25530274
9257