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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25525887_25527075_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25525887 - 25527075
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATCT
Flanking Amino Acid:
PCCDVVEVVNGKFPGEPINI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.8
0.6
0.8
70.2
35.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
60
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035216
25522192 - 25530274
8083