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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25527166_25527639_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25527166 - 25527639
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCATCCAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTGATTAAAT
Flanking Amino Acid:
ISTRMLMNQHTLLFDDKSSS
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
61.2
0.25
1
56.1
37.7
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
54.7
0.23
2.1
78.5
43.3

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045209
25522543 - 25530274
7732
ENSAPLT00000035216
25522192 - 25530274
8083
ENSAPLT00000016375
25521018 - 25530274
9257