About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25528451_25529440_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25528451 - 25529440
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
STPSVQLVKSWYIQSLMELV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035216
25522192 - 25530274
8083
ENSAPLT00000016375
25521018 - 25530274
9257