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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25529583_25530105_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25529583 - 25530105
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
ATTTGCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
TTTGGTTGGATT
Flanking Amino Acid:
PLSIKQLLDFGSTNGCERTS
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
79.7
0.67
0.8
74.2
35.9
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
47.3
-0.1
2
70.82
41.1

Associated Gene:

Gene:
PDK4
Ensembl Gene ID:
ENSAPLG00000015678
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035216
25522192 - 25530274
8083
ENSAPLT00000016375
25521018 - 25530274
9257
ENSAPLT00000045209
25522543 - 25530274
7732