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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25562746_25577757_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25562746 - 25577757
Intron Length:
15012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTCCATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
71.7
38.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
35.6
-1.6
2.8
46
42
Minor BPS
60.9
0.42
1.9
81.91
39.5

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038897
25562673 - 25725775
163103
ENSAPLT00000025095
25562673 - 25725775
163103
ENSAPLT00000016457
25562673 - 25749427
186755