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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25582316_25603630_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25582316 - 25603630
Intron Length:
21315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTAACAGTAACC
Flanking Amino Acid:
QDSGDLGPIGRRRLHKLGVS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.3
0.53
0.8
71.2
34
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
46.8
-0.2
2.3
61.25
43.5

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038897
25562673 - 25725775
163103