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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25599184_25603630_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25599184 - 25603630
Intron Length:
4447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATATGTC
5'SS Class:
major
3'SS Sequence:
TATTCCATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTAACAGTAACC
Flanking Amino Acid:
VLQLQSDSELGRRLHKLGVS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
65.6
38.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.3
0.53
0.8
71.2
34
Minor 5ss
42.2
-0.9
3.2
51.7
45.7
Minor BPS
46.8
-0.2
2.3
61.25
43.5

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025095
25562673 - 25725775
163103
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000016457
25562673 - 25749427
186755
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000030937
25579552 - 25725775
146224