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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25603747_25652331_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25603747 - 25652331
Intron Length:
48585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTCTCCATTT
Flanking Amino Acid:
QTPLATHQSEGLCINAEICA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
59.5
0.21
1.7
72.6
37.6
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
46
-0.2
2
68.52
43

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016457
25562673 - 25749427
186755