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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25603747_25661753_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25603747 - 25661753
Intron Length:
58007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
AATCTCACAATT
Flanking Amino Acid:
QTPLATHQSEEDEDDEEMVE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
86.4
0.82
0.7
80.4
31.6
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
47.8
-0
1.7
66.45
37.8

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030937
25579552 - 25725775
146224
ENSAPLT00000025095
25562673 - 25725775
163103
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000038897
25562673 - 25725775
163103