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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2562141_2562376_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2562141 - 2562376
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTTCAACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTAATGTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71
0.47
0.9
67.3
32.8
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
50.9
0.02
2.1
64.25
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033505
2557878 - 2572254
14377