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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2562544_2564793_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2562544 - 2564793
Intron Length:
2250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGGACC
5'SS Class:
major
3'SS Sequence:
GTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CTTATGTAGACT
Flanking Amino Acid:
KTSLQDCTKKRAQVNLPYSG
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
63.5
40.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.7
0.82
0.8
84.8
35.6
Minor 5ss
40.1
-1.1
3
53.4
43.7
Minor BPS
44.5
-0.3
2.4
66.71
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045720
2542964 - 2572254
29291
ENSAPLT00000033505
2557878 - 2572254
14377
ENSAPLT00000019041
2552030 - 2572661
20632