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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25652383_25661753_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25652383 - 25661753
Intron Length:
9371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
AATCTCACAATT
Flanking Amino Acid:
ICALRCLSYREDEDDEEMVE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
86.4
0.82
0.7
80.4
31.6
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
47.8
-0
1.7
66.45
37.8

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016457
25562673 - 25749427
186755