About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25661844_25670628_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25661844 - 25670628
Intron Length:
8785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TACTCTTTAACT
Flanking Amino Acid:
NQDQKQEVKEAPPRELTEEE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
75.6
0.58
1
75.1
38.8
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
82.7
1.11
1
88.93
35.9

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025095
25562673 - 25725775
163103
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000016457
25562673 - 25749427
186755
ENSAPLT00000038897
25562673 - 25725775
163103
ENSAPLT00000030937
25579552 - 25725775
146224