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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25670792_25671961_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25670792 - 25671961
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTGGATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GCTTCCTCAAAA
Flanking Amino Acid:
YSGRDVEEKDGDVQAGANLS
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
69.7
43.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
75.8
0.58
0.9
69
41
Minor 5ss
38.8
-1.3
2.8
41.9
44.6
Minor BPS
62.4
0.38
1.7
70.08
41.7

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000016457
25562673 - 25749427
186755
ENSAPLT00000038897
25562673 - 25725775
163103
ENSAPLT00000030937
25579552 - 25725775
146224
ENSAPLT00000025095
25562673 - 25725775
163103