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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2567208_2569611_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2567208 - 2569611
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
ATTTCCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
AGACAGTTAAAA
Flanking Amino Acid:
WRALEKERKKTEADLARNFP
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.2
0.63
0.7
75.4
29.2
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
43
-0.5
2.2
51.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045720
2542964 - 2572254
29291
ENSAPLT00000033505
2557878 - 2572254
14377
ENSAPLT00000019041
2552030 - 2572661
20632