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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25698467_25702694_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25698467 - 25702694
Intron Length:
4228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
AATGTGTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCGCTCTGATTT
Flanking Amino Acid:
RTPLSAAAHTHPVYCVNVVG
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70
42.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.9
0.51
1
62.3
47.6
Minor 5ss
34.8
-1.7
3.4
48.3
47.3
Minor BPS
47.2
-0.1
1.7
61.42
43

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025095
25562673 - 25725775
163103
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000016457
25562673 - 25749427
186755
ENSAPLT00000038897
25562673 - 25725775
163103
ENSAPLT00000030937
25579552 - 25725775
146224