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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25705737_25709054_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25705737 - 25709054
Intron Length:
3318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
CTTCCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TCACTCTGAATG
Flanking Amino Acid:
GTVYTACRHGSKAGIGEIFE
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.9
0.74
0.7
77.1
24.8
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
51.8
-0
1.5
54.16
41

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000016457
25562673 - 25749427
186755
ENSAPLT00000038897
25562673 - 25725775
163103
ENSAPLT00000030937
25579552 - 25725775
146224
ENSAPLT00000025095
25562673 - 25725775
163103