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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25709200_25725208_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25709200 - 25725208
Intron Length:
16009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCGCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GAAGTCTTCACG
Flanking Amino Acid:
DWTVKLWTTKHNKPLYSFED
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
71.1
0.47
0.8
64.3
31.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.1
-0.3
1.9
49.6
44

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025095
25562673 - 25725775
163103
ENSAPLT00000019711
25579552 - 25731297
151746
ENSAPLT00000046588
25577758 - 25743617
165860
ENSAPLT00000016457
25562673 - 25749427
186755
ENSAPLT00000038897
25562673 - 25725775
163103
ENSAPLT00000030937
25579552 - 25725775
146224