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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25731139_25743410_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25731139 - 25743410
Intron Length:
12272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TCCTCCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TGCTCTTGAAAT
Flanking Amino Acid:
GRIWIYDVGEESLQPSQESG
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
74.8
0.56
0.7
73.1
25.1
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
60.8
0.42
1.6
74.95
41.5

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046588
25577758 - 25743617
165860