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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25731139_25749316_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25731139 - 25749316
Intron Length:
18178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
GTTCCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
AGCGTGTTAACG
Flanking Amino Acid:
GRIWIYDVGELAVPHNDEWT
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.9
0.56
0.8
66
35.9
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
46
-0.4
2.2
49.4
44.7

Associated Gene:

Gene:
DYNC1I1
Ensembl Gene ID:
ENSAPLG00000015780
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016457
25562673 - 25749427
186755