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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25755914_25756264_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25755914 - 25756264
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAGGACCC
5'SS Class:
weak_major
3'SS Sequence:
TGCTCGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
ATCATCTTACAG
Flanking Amino Acid:
SPPTSKAAAAITRADVTHRH
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.1
48.4
40.8
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
71.9
0.49
1
64.7
41.3
Minor 5ss
34
-1.8
3.4
48.9
40.9
Minor BPS
47.1
-0.3
1.8
51.12
43.1

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035241
25755521 - 25847389
91869