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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25756443_25757247_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25756443 - 25757247
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TATTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATTA
Flanking Amino Acid:
QRWFYVDFGGVKPAGSEPVP
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.8
81.1
35.8
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
66.3
0.51
1.6
74.26
38.3

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035241
25755521 - 25847389
91869
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357