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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25757339_25757421_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25757339 - 25757421
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TCTTCTTTCAAG
Flanking Amino Acid:
GPKALWKGAGARVFRSSPQF
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.4
28.8
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
76.1
0.59
1
74.7
33.9
Minor 5ss
32.6
-2
3.1
39.4
46.5
Minor BPS
54.8
0.01
2
63.96
44.2

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357
ENSAPLT00000035241
25755521 - 25847389
91869