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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25757581_25760992_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25757581 - 25760992
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
GCAGCAAAAACC
Flanking Amino Acid:
GNLLLAGSIAGMPAASLVTP
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
70
0.5
1
59.3
39.1
Major PPT
83.2
0.75
0.7
77.2
31.5
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
39.6
-0.8
2.1
46.03
42.2

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035241
25755521 - 25847389
91869
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357