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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25761132_25772373_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25761132 - 25772373
Intron Length:
11242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCATTCTCAAAA
Flanking Amino Acid:
RDLGFFGLYKGAKACFLRDI
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79
37.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.7
0.62
0.8
73
30.9
Minor 5ss
52.2
0.08
2.8
76.1
39.6
Minor BPS
56.7
0.21
1.6
65.51
40.6

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357
ENSAPLT00000035241
25755521 - 25847389
91869