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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25792741_25794968_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25792741 - 25794968
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAT
Flanking Amino Acid:
PYNLAEAQRQKAPGDVSRPV
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.9
0.47
0.9
65.6
34.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
70.8
0.73
1.3
85.51
34.3

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357
ENSAPLT00000035241
25755521 - 25847389
91869