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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25795054_25795228_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25795054 - 25795228
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GCTGAATTAATT
Flanking Amino Acid:
FQLADLYEPRGRMTLADIER
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.2
0.66
0.9
77.5
36.5
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
49.2
0.02
1.9
66.74
43.9

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357
ENSAPLT00000035241
25755521 - 25847389
91869