About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25796291_25804854_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
25796291 - 25804854

Intron Length:
8564

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTGGGTATA

5'SS Class:
major

3'SS Sequence:
GTCTCTACTCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTTAC

U12 Branch Point Sequence:
TCTTCTTTTACT

Flanking Amino Acid:
TYAEFTQFLLAAGGTTSHQV

Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77
0.64
1
75.8
35.2

Major BPS
74.2
0.6
1
67
39.4

Major PPT
71.6
0.49
0.9
63.2
38.3

Minor 5ss
32.6
-2
3.1
38.1
42.1

Minor BPS
74.3
0.85
1.5
87.77
37.8

Associated Gene:

Gene:
SLC25A13

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

25756253 - 25847389
91137