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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25804995_25814667_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25804995 - 25814667
Intron Length:
9673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTATTAGACT
Flanking Amino Acid:
DKTGKGEVTFEDAKQVFGQT
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
54.6
0.23
1.9
76.74
39.9

Associated Gene:

Gene:
SLC25A13
Ensembl Gene ID:
ENSAPLG00000015909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035241
25755521 - 25847389
91869
ENSAPLT00000029764
25756253 - 25847389
91137
ENSAPLT00000016646
25756253 - 25846609
90357