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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25907099_25908069_F

Intron Information:

Intron Rank:
133173
Intron Class:
major
Intron Phase:
Intron Coordinates:
25907099 - 25908069
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTCCTTGTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.4
37.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
30.9
-2.2
3
42
44.5
Minor BPS
49.1
-0.2
2.1
59.55
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034894
25906472 - 25908075
1604