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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25912096_25918348_R

Intron Information:

Intron Rank:
132907
Intron Class:
major
Intron Phase:
Intron Coordinates:
25912096 - 25918348
Intron Length:
6253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TACTGAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATACTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.1
0.45
1
59.4
44.9
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
61.4
0.43
1.6
76.63
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018381
25912051 - 25925858
13808