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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25918444_25924855_R

Intron Information:

Intron Rank:
132908
Intron Class:
major
Intron Phase:
Intron Coordinates:
25918444 - 25924855
Intron Length:
6412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATACAAA
5'SS Class:
major
3'SS Sequence:
ATTTTCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTATTTTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.3
0.64
0.8
76.1
33.2
Minor 5ss
44.1
-0.6
2.7
56.7
47.6
Minor BPS
47.9
-0
1.7
64.96
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018381
25912051 - 25925858
13808