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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25946835_25948607_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25946835 - 25948607
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATATTTTAATA
Flanking Amino Acid:
NVEDDFSNQLRAELEKHGYK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
68.5
0.58
1.2
72.59
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019053
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023871
25946731 - 25952414
5684