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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25948702_25952083_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25948702 - 25952083
Intron Length:
3382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCGGC
5'SS Class:
weak_major
3'SS Sequence:
TTCCTGCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
AAATATTTACCT
Flanking Amino Acid:
DDEFEEFPAEDWTGLDEDED
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.2
48.6
42.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
76.1
0.59
0.8
73.8
31.3
Minor 5ss
35.7
-1.6
3.5
50.3
46.3
Minor BPS
52.7
0.16
1.8
69.54
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019053
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023871
25946731 - 25952414
5684