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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25969100_25969323_F

Intron Information:

Intron Rank:
123294
Intron Class:
major
Intron Phase:
Intron Coordinates:
25969100 - 25969323
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTGGTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
81.7
31.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78
0.63
1
73
42
Minor 5ss
28.2
-2.5
3.9
43
37.7
Minor BPS
64.6
0.54
1.4
74.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018247
25969007 - 25974141
5135