Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25970147_25970511_F

Intron Information:

Intron Rank:

123295

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25970147 - 25970511

Intron Length:

365

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

AAG|GTGCTTTGA

5'SS Class:

major

3'SS Sequence:

TTTTCTCTCCTGG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TTTCACTAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.1

64.1

38.5

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

45.4

-0.2

3.2

36.5

Minor 5ss

33.1

-1.9

41.5

44.9

Minor BPS

55.8

0.26

80.16

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018247

25969007 - 25974141

5135