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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25970658_25973824_F

Intron Information:

Intron Rank:
123296
Intron Class:
major
Intron Phase:
Intron Coordinates:
25970658 - 25973824
Intron Length:
3167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGGAGGA
5'SS Class:
major
3'SS Sequence:
TTGCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
55.9
37.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.9
0.7
0.9
78.1
34.9
Minor 5ss
24.7
-2.9
3.4
28.4
37.8
Minor BPS
67.7
0.63
1.7
88.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018247
25969007 - 25974141
5135