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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26069309_26070142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26069309 - 26070142
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GAGATTTCAACT
Flanking Amino Acid:
AASQTRADDADQQKTTVIEN
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.5
0.75
0.9
77.3
37
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
49.6
0.05
1.6
62.58
41.4

Associated Gene:

Gene:
DLX6
Ensembl Gene ID:
ENSAPLG00000016266
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016966
26068951 - 26072420
3470