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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2607287_2607334_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2607287 - 2607334
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CTTCCCCAGCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCCCCAGCA
Flanking Amino Acid:
EDAGEIFTVTTGTPMLALFF
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
53.8
0.09
1.1
53.3
36
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
49.2
-0
2.1
68.63
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022415
2606045 - 2623611
17567