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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2607383_2610794_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2607383 - 2610794
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTCATGCAT
5'SS Class:
weak_major
3'SS Sequence:
AAAAATAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGAAAAATAAAA
Flanking Amino Acid:
ALFFPGIFMVKTSVTLGWSP
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.1
1.3
56.1
42.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
48.4
-0
1.1
38.1
42.2
Minor 5ss
29.6
-2.3
3.3
39.7
39.9
Minor BPS
40.7
-0.7
2
51.42
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022415
2606045 - 2623611
17567