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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26101276_26104231_F

Intron Information:

Intron Rank:
143793
Intron Class:
major
Intron Phase:
Intron Coordinates:
26101276 - 26104231
Intron Length:
2956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TGGTATCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
67.4
44
Major BPS
100
1.24
0.5
100
0
Major PPT
73.4
0.53
1
65.8
40.7
Minor 5ss
33.5
-1.9
3.6
48.9
47.3
Minor BPS
49.1
0.01
2
75.13
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027483
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035832
26100805 - 26105312
4508