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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2611041_2612285_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2611041 - 2612285
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAA
U12 Branch Point Sequence:
GGTCTCAGACAT
Flanking Amino Acid:
YLEFPGSMHLEPVLAVKTPL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68
38.8
Major BPS
53.4
0.09
1
62.6
33
Major PPT
86.7
0.83
0.7
80
31.9
Minor 5ss
34.7
-1.7
2.8
41.9
44.5
Minor BPS
39.3
-0.7
1.8
54.38
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022415
2606045 - 2623611
17567