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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26177978_26179240_R

Intron Information:

Intron Rank:
148505
Intron Class:
major
Intron Phase:
Intron Coordinates:
26177978 - 26179240
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTCACCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.5
0.51
0.9
67.1
33
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
49.4
-0
2.1
69.96
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027300
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045280
26177611 - 26180731
3121