About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2621304_2623522_F

Intron Information:

Intron Rank:
9
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
2621304 - 2623522
Intron Length:
2219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CATAAAAAGGAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
ATAAAAA
U12 Branch Point Sequence:
TTTGCCTTCACT
Flanking Amino Acid:
DKATFQVKVRGSDCTSPSLC
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
52.6
0.07
1
59.7
32.6
Major PPT
44.7
-0.3
1.2
35.9
38
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
73.7
0.83
1.8
91.67
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022415
2606045 - 2623611
17567