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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26308630_26308779_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26308630 - 26308779
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCGCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
TCCCCGCTGATG
Flanking Amino Acid:
ADWADGEQAKEELPLPLEHF
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
69.4
0.44
0.9
61.6
35
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
40.4
-0.9
2.2
44.19
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033345
26307752 - 26311067
3316
ENSAPLT00000021541
26307752 - 26313555
5804
ENSAPLT00000017000
26307752 - 26311067
3316
ENSAPLT00000043908
26307236 - 26311067
3832