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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_26308877_26309310_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26308877 - 26309310
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTCCTCCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CCTCCTCCAACC
Flanking Amino Acid:
FFGLMGKRDAGYGQISHKRH
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
66.1
0.36
0.9
59.2
36
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
46.5
-0.2
1.9
56.53
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043908
26307236 - 26311067
3832
ENSAPLT00000033345
26307752 - 26311067
3316
ENSAPLT00000021541
26307752 - 26313555
5804
ENSAPLT00000017000
26307752 - 26311067
3316